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Characterization of the rainbow
trout transcriptome using Sanger and Next GENeration sequencing
Moh Salem (mosalem@mail.wvu.edu)
Division of Animal and Nutritional Sciences, West Virginia University
This rainbow trout transcriptome reference sequence was assembled using ~1.3
million 454-pyrosequencing ESTs (average length of 344bp, a total of 447
million bases) of a Swanson rainbow trout doubled-haploid fish in addition to
the 258,973 Sanger-based sequences downloaded from the Trout Gene Index
database release 7.0, July 6, 2008,
http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=r_trout.
The assembly resulted in 161,818 TCs (Average length 758 nt) and 261,071
singletons. For inquiries, please contact: Moh Salem
(mosalem@mail.wvu.edu)
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Rainbow Trout EST Contigs
(Last updated: Jan 25, 2011) |
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Rainbow Trout EST Singletons
(Last updated: Sep 27, 2010) |
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