chromosome 2
100800 bytes allocated in orders_morecore
3024000 bytes allocated in morecore
Option chosen: fixed
Current values for parameters:
par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000 [# bytes reserved for our_alloc]
SEX_EQ = 1 [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 2.000
PK_LIKE_TOL = 2.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1
Haplotyped system (distances forced to 0.0):
0 CRYG1-5 2 CRYG1-5_2 4 CRYG1-5_3
Haplotyped system (distances forced to 0.0):
1 D2S54 3 D2S54_2
Haplotyped system (distances forced to 0.0):
24 D2S38_2 23 D2S38
Haplotyped system (distances forced to 0.0):
40 D2S5_2 39 D2S5
Haplotyped system (distances forced to 0.0):
42 D2S1_2 41 D2S1
Haplotyped system (distances forced to 0.0):
44 TPO 45 TPO_2
Haplotyped system (distances forced to 0.0):
54 APOB_2 53 APOB
Haplotyped system (distances forced to 0.0):
64 D2S61_2 63 D2S61
Haplotyped system (distances forced to 0.0):
75 TGFA_3 73 TGFA_2 72 TGFA
76 TGFA_4
N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.
Sex_averaged map (recomb. frac., Kosambi cM):
0 CRYG1-5 0.0
0.00* 0.0
2 CRYG1-5_2 0.0
0.00* 0.0
4 CRYG1-5_3 0.0
0.26 28.3
21 D2S40 28.3
0.20 21.7
55 D2S51 50.0
0.10 9.6
61 LCT 59.6
0.06 6.2
68 D2S44 65.8
0.04 3.8
77 Prot_C/pcr 69.6
0.04 3.7
1 D2S54 73.3
0.00* 0.0
3 D2S54_2 73.3
0.06 5.8
49 LCO 79.1
0.04 4.4
20 D2S41 83.4
0.04 3.8
69 D2S43 87.2
0.12 12.0
10 D2S25 99.2
0.03 2.9
33 D2S62 102.1
0.02 1.9
24 D2S38_2 104.0
0.00* 0.0
23 D2S38 104.0
0.12 12.4
59 D2S45 116.4
0.10 9.8
26 D2S30 126.2
0.08 7.9
28 D2S31 134.1
0.03 3.1
40 D2S5_2 137.2
0.00* 0.0
39 D2S5 137.2
0.06 5.7
31 D2S28 142.9
0.17 17.5
66 D2S6 160.4
0.03 3.0
17 D2S19 163.4
0.10 10.3
70 D2S46 173.7
0.09 9.5
56 D2S48 183.2
0.12 12.2
54 APOB_2 195.3
0.00* 0.0
53 APOB 195.3
0.06 6.2
50 D2S70 201.6
0.35 44.1
44 TPO 245.7
0.00* 0.0
45 TPO_2 245.7
0.03 3.2
65 D2S47 248.9
0.01 1.4
42 D2S1_2 250.3
0.00* 0.0
41 D2S1 250.3
0.04 3.7
5 ACP1 254.0
* denotes recomb. frac. held fixed in this analysis
log10_like = -1141.012