Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
27
Number of QTL / associations found:
15,801
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
5371.37946
29
9e-41
9.310345e-41
Chromosome 1
1118.30814
29
7.966635e-217
1.194995e-215
Chromosome 2
1493.71425
29
1.194599e-296
3.583797e-295
Chromosome 3
2341.04364
29
9e-41
9.310345e-41
Chromosome 4
2275.77600
29
9e-41
9.310345e-41
Chromosome 5
561.94506
29
4.897547e-100
3.673160e-99
Chromosome 6
2049689.23119
29
9e-41
9.310345e-41
Chromosome 7
60.30990
29
0.0005650994
5.650994e-04
Chromosome 8
3044.46870
29
9e-41
9.310345e-41
Chromosome 9
3812.15646
29
9e-41
9.310345e-41
Chromosome 10
2799.74097
29
9e-41
9.310345e-41
Chromosome 11
290.66337
29
5.67096e-45
3.402576e-44
Chromosome 12
7507.88082
29
9e-41
9.310345e-41
Chromosome 13
930.11274
29
4.888862e-177
4.888862e-176
Chromosome 14
16265.96937
29
9e-41
9.310345e-41
Chromosome 15
4635.18747
29
9e-41
9.310345e-41
Chromosome 16
3377.94192
29
9e-41
9.310345e-41
Chromosome 17
5777.01018
29
9e-41
9.310345e-41
Chromosome 18
7785.04743
29
9e-41
9.310345e-41
Chromosome 19
4635.18747
29
9e-41
9.310345e-41
Chromosome 20
5626.56483
29
9e-41
9.310345e-41
Chromosome 21
3457.35783
29
9e-41
9.310345e-41
Chromosome 22
5950.38015
29
9e-41
9.310345e-41
Chromosome 23
7044.42609
29
9e-41
9.310345e-41
Chromosome 24
6930.86922
29
9e-41
9.310345e-41
Chromosome 25
7705.34424
29
9e-41
9.310345e-41
Chromosome 26
8520.82929
29
9e-41
9.310345e-41
Chromosome 27
7547.16852
29
9e-41
9.310345e-41
Chromosome 28
7547.16852
29
9e-41
9.310345e-41
Chromosome 29
8354.45151
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 27 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
14.87055
26
0.9596558
9.596558e-01
Average daily gain
751.51467
26
1.104770e-141
9.942930e-141
BWF scaled by BWI
128.6225
26
1.503003e-15
2.536318e-15
Body capacity
64.52001
26
4.021025e-05
4.934894e-05
Body circumference
278.42497
26
4.201643e-44
1.260493e-43
Body depth
1024.15449
26
2.816077e-199
7.603408e-198
Body height
543.67833
26
3.109488e-98
1.399270e-97
Body length
264.48436
26
2.426684e-41
6.552047e-41
Body size
51.12586
26
0.002301530
2.589221e-03
Body weight
650.37578
26
1.795750e-120
1.212131e-119
Body weight gain
552.90129
26
3.778189e-100
2.040222e-99
Cannon bone circumference
94.61851
26
9.90933e-10
1.337760e-09
Chest width
155.88642
26
1.746419e-20
3.627178e-20
Finishing precocity
340.74538
26
1.367913e-56
4.616706e-56
Growth index
139.57957
26
1.645473e-17
3.173412e-17
Head length
57.98167
26
0.0003113093
3.654500e-04
Head width
117.10212
26
1.581261e-13
2.511415e-13
Hip width
233.24502
26
3.305448e-35
7.437258e-35
Longissimus muscle area growth
68.99956
26
9.267716e-06
1.191563e-05
Maturity rate
470.76436
26
3.787788e-83
1.461004e-82
Metabolic body weight
2307.6894
26
9e-41
2.209091e-40
Relative growth rate
112.44027
26
1.009311e-12
1.513967e-12
Rump length
135.26059
26
9.842651e-17
1.771677e-16
Rump width
827.90316
26
9.097338e-158
1.228141e-156
Shoulder width
38.91402
26
0.04968429
5.365903e-02
Subcutaneous fat increase
36.44312
26
0.08381579
8.703947e-02
Thigh width (maximum)
108.36666
26
5.017611e-12
7.130289e-12
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
2192457.634740
Number of traits:
27
df
=
754
Number of QTLs:
15,801
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
