Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of coat texture traits:
2
Number of QTL / associations found:
61
Number of chromosomes where QTL / associations are found:
4
Chi-squared (χ2) test: are coat texture traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 10
23.02460
3
3.990903e-05
7.981806e-05
Chromosome 12
6.89344
3
0.07537288
1.004972e-01
Chromosome 20
73.97540
3
6.00739e-16
2.402956e-15
Chromosome 23
1.38524
3
0.7089982
7.089982e-01
Chi-squared (χ2) test: Which of the 2 coat texture traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Coat texture
9.34096
1
0.002240881
2.240881e-03
Hair length
31.35898
1
2.144644e-08
4.289288e-08
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
4
χ2
=
105.278680
Number of traits:
2
df
=
3
Number of QTLs:
61
p-value
=
1.13816e-22
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
