| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 20.96 (cM) |
| QTL Span: | 20.96-20.96 (cM)
18.1-18.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109785093 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.90E-14 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | KITLG (KIT ligand) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #21151
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Fleckvieh cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using three SNP arrays, with a resulting dataset comprising 658385 SNPs, and analyzed for eye-area pigmentation. |
| Analysis: | A variance component-based approach was used. |
| Software: | EMMAX, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Pausch H, Wang X, Jung S, Krogmeier D, Edel C, Emmerling R, G�tz KU, Fries R |
| Affiliation: | Lehrstuhl fuer Tierzucht, Technische Universitaet Muenchen, Freising, Germany. |
| Title: | Identification of QTL for UV-protective eye area pigmentation in cattle by progeny phenotyping and genome-wide association analysis. |
| Journal: | PloS one, 2012, 7 (5): e36346 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #22567150
Add your comments
Note similar findings
Note contradictions
|
