| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 81.93 (cM) |
| QTL Span: | 81.55-82.32 (cM)
73.7-74.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs136626080 |
| Peak: | |
| Lower, "Significant": | rs137792759 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.9007% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore bulls. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip or GeneSeek 70K Genomic Profiler Indicus HD, with data imputed to HD, and analyzed for meat color traits. A total of 414,577 SNPs were used for analysis. |
| Analysis: | Both single- and multi-trait GWAS were performed to detect genomic regions associated with meat color traits. |
| Software: | BLUPF90, AIREMLF90, POSTGSF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Marín-Garzón NA, Magalhães AFB, Mota LFM, Fonseca LFS, Chardulo LAL, Albuquerque LG |
| Affiliation: | São Paulo State University (Unesp), College of Agricultural and Veterinarian Sciences, Via de Acesso Professor Paulo Donato Castelane Castellane S/N - Vila Industrial, 14884-900 Jaboticabal, SP, Brazil |
| Title: | Genome-wide association study identified genomic regions and putative candidate genes affecting meat color traits in Nellore cattle |
| Journal: | Meat science, 2020, 171: 108288 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | single-trait GWAS |
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