| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 24.74 (cM) |
| QTL Span: | 24.74-24.74 (cM)
18.8-18.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs380118891 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using medium-density SNP panels, with data imputed to WGS, and analyzed for milking speed and temperament. A total of 5,771,890 and 5,808,944 SNPs were used for the GWAS analyses of temperament and milking speed, respectively. |
| Analysis: | A mixed linear model was used for association analysis. |
| Software: | FImpute, PLINK, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Chen SY, Oliveira HR, Schenkel FS, Pedrosa VB, Melka MG, Brito LF |
| Affiliation: | Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907 |
| Title: | Using imputed whole-genome sequence variants to uncover candidate mutations and genes affecting milking speed and temperament in Holstein cattle |
| Journal: | Journal of dairy science, 2021, 103(11): 10383-10398 |
| Links: |
PubMed | Abstract | List all data
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