| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | 95.82 (cM) |
| QTL Span: | 95.82-95.82 (cM)
50.7-50.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41921177 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CCDC57 (coiled-coil domain containing 57) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50v2 BeadChip and analyzed for fatty acid composition. A total of 40657 SNPs were used for the analysis. |
| Analysis: | A mixed model and linear regression were used. |
| Software: | PLINK, ASREML, HAPLOVIEW |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ishii A, Yamaji K, Uemoto Y, Sasago N, Kobayashi E, Kobayashi N, Matsuhashi T, Maruyama S, Matsumoto H, Sasazaki S, Mannen H |
| Affiliation: | Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe, Japan. |
| Title: | Genome-wide association study for fatty acid composition in Japanese Black cattle. |
| Journal: | Animal science journal, 2013, 84 (10): 675-82 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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