Release 56
(Apr 24, 2025)

QTL 262671 Description:

 Trait Information
Trait name: Intramuscular fat Vertebrate Trait Ontology: Intramuscular adipose amount
Reported name: (n/a) Product Trait Ontology: Intramuscular fat content
Symbol: IMF Clinical Measurement Ontology: Intramuscular fat morphological measurement
 QTL Map Information
Chromosome:20
QTL Peak Location:n/a
QTL Span:n/a
12.7-12.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs42243764
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:n/a
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
Pleiotropic QTL found: 20_ rs42243764 involving 2 QTL in 0 breeds

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  •  QTL Experiment in Brief
    Animals:Animals were Nelore steers.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineHD 770K BeadChip, and GWAS were performed for feed efficiency and meat quality traits. A total of 428,884 SNPs were used for analysis.
    Analysis:A linear mixed model (REML) was used.
    Software:PLINK v1.0744, GEMMA v0.9411, GCTA 1.93.2, Haploview v4.2
    Notes: 
    Links:Edit

     Reference
    Authors:Buss CE, Afonso J, de Oliveira PSN, Petrini J, Tizioto PC, Cesar ASM, Gustani-Buss EC, Cardoso TF, Rovadoski GA, da Silva Diniz WJ, de Lima AO, Rocha MIP, Andrade BGN, Wolf JB, Coutinho LL, Mourão GB, de Almeida Regitano LC
    Affiliation:Department of Genetic and Evolution, Federal University of São Carlos, São Carlos, São Paulo, Brazil
    Title:Bivariate GWAS reveals pleiotropic regions among feed efficiency and beef quality-related traits in Nelore cattle
    Journal:Mammalian genome, 2023, 34(1):90-103
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #36463529
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  • Cite this Data:

    Animal QTLdb: QTL262671 was published in 2023, and was curated into QTLdb on 2023-01-03. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:262671

     

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