| QTL Map Information |
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| Chromosome: | 20 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
41.7-41.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41944653 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 74.07% | | P_values | 5.75E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PDZD2 (PDZ domain containing 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were adult female cattle (39 Brahman and 119 Yunling). |
| Breeds associated:
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| Design: | GWAS was performed for ear size. Based on whole-genome sequence, a total of 13,057,965 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used for primary association analysis, and a multiple linear regression model was used for secondary association analysis. |
| Software: | GEMMA, PLINK v.1.90b6.21 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shen J, Xia X, Sun L, Ma X, Huang B, Hanif Q, Chen N, Qu K, Zhang J, Chen H, Jiang Y, Lei C |
| Affiliation: | Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China. |
| Title: | Genome-wide association study reveals that the IBSP locus affects ear size in cattle. |
| Journal: | Heredity, 2023, (Online: Apr 2023) |
| Links: |
PubMed | Abstract | List all data
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