| QTL Map Information |
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| Chromosome: | 13 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109334889 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
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VARIANCE | 46.6% | | P_values | <0.05 | | Dominance effect: | -0.467 |
| Additive effect: | 0.702 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were Nellore cattle. |
| Breeds associated:
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| Design: | Previously obtained genotypes from the Illumina BovineHD BeadChip were used to perform GWAS for coat color darkening of the head, neck, hump, and knees. A total of 541,919 SNPs were used for analysis. |
| Analysis: | Mixed linear model analysis with the leave-one-chromosome-out (MLMA-LOCO) procedure was used. The GWAS was performed a second time including the top-scoring SNP as a fixed effect. |
| Software: | PLINK v1.9b4.6, GCTA v1.90.2 beta, R software v3.6.2, SAMtools v1.9, BCFtools v1.10.2, CNVcaller, PicardTools v1.119 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Trigo BB, Utsunomiya ATH, Fortunato AAAD, Milanesi M, Torrecilha RBP, Lamb H, Nguyen L, Ross EM, Hayes B, Padula RCM, Sussai TS, Zavarez LB, Cipriano RS, Caminhas MMT, Lopes FL, Pelle C, Leeb T, Bannasch D, Bickhart D, Smith TPL, Sonstegard TS, Garcia JF, Utsunomiya YT |
| Affiliation: | School of Veterinary Medicine, Araçatuba, Department of Production and Animal Health, São Paulo State University (Unesp), Araçatuba, SP, Brazil |
| Title: | Variants at the ASIP locus contribute to coat color darkening in Nellore cattle |
| Journal: | Genetics, Selection, Evolution : GSE, 2021, 53(1): 40 |
| Links: |
PubMed | Abstract | List all data
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