QTL Map Information |
Chromosome: | 24 |
QTL Peak Location: | n/a |
QTL Span: | n/a 37.7-37.7 (Mbp) |
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Upper, "Suggestive": | n/a |
Upper, "Significant": | n/a |
Peak: | rs378130598 |
Lower, "Significant": | n/a |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | QTL |
Model tested: | n/a |
Test base: | Comparison-wise |
Threshold significance level: | Significant |
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P_values | 2.33E-7 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | n/a |
Cis/Trans acting type: |  |
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Extended information: |
(none) |
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QTL Experiment in Brief |
Animals: | Animals were Spanish Holstein cows. |
Breeds associated:
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Design: | Animals were genotyped using the EuroG MD BeadChip, with data imputed to HD then whole-genome sequence, and GWAS were performed for the presence or absence of bovine paratuberculosis lesions. A total of 13,881,067 SNSPs were used for analysis. |
Analysis: | Mixed linear models were used. |
Software: | GCTA 1.93.2, Eagle 2.4, minimac4 |
Notes: | |
Links: | Edit |
Reference |
Authors: | Canive M, Badia-Bringué G, Vázquez P, González-Recio O, Fernández A, Garrido JM, Juste RA, Alonso-Hearn M |
Affiliation: | Department of Animal Health, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Derio, Bizkaia, Spain |
Title: | Identification of loci associated with pathological outcomes in Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis using whole-genome sequence data |
Journal: | Scientific reports, 2021, 11(1): 20177 |
Links: |
PubMed | Abstract | List all data
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