| QTL Map Information |
|---|
| Chromosome: | X |
| QTL Peak Location: | 7.04 (cM) |
| QTL Span: | 6.33-7.75 (cM)
4.9-5.8 (Mbp) |
 |
Upper, "Suggestive": | rs69486527 |
| Upper, "Significant": | n/a |
| Peak: | rs69487943 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | rs69487943 |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Suggestive |
 |
VARIANCE | 0.38% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Icelandic horses and Exmoor ponies. |
| Breeds associated:
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| Design: | Icelandic horses were genotyped using the Illumina EquineSNP50 or EquineSNP70 Beadchip and analyzed for insect bite hypersensitivity. A total of 33,523 SNPs were used for analysis. For the validation study, three candidate SNPs were genotyped in Exmoor ponies. |
| Analysis: | The Bayes C method was used to perform GWAS. |
| Software: | GenSel v4R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shrestha M, Solé M, Ducro BJ, Sundquist M, Thomas R, Schurink A, Eriksson S, Lindgren G |
| Affiliation: | Department of Biosystems, KU Leuven, Leuven, Belgium |
| Title: | Genome-wide association study for insect bite hypersensitivity susceptibility in horses revealed novel associated loci on chromosome 1 |
| Journal: | Journal of animal breeding and genetics, 2019, 137(2):223-233 |
| Links: |
PubMed | Abstract | List all data
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