| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
79.9-79.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68525762 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Friesian horses. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina EquineSNP50 Genotyping BeadChip, and GWAS of hydrocephalus was performed. A total of 29,720 SNPs were used for analysis. |
| Analysis: | Significant SNPs were identified based on differences in genotype frequencies between cases and controls using a chi-square test. |
| Software: | GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ducro BJ, Schurink A, Bastiaansen JW, Boegheim IJ, van Steenbeek FG, Vos-Loohuis M, Nijman IJ, Monroe GR, Hellinga I, Dibbits BW, Back W, Leegwater PA |
| Affiliation: | Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH, Wageningen, The Netherlands |
| Title: | A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses |
| Journal: | BMC Genomics, 2015, 16: 761 |
| Links: |
PubMed | Abstract | List all data
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