| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 358.17 (cM) |
| QTL Span: | 358.17-358.17 (cM)
42.7-42.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68599438 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
LOD_score | 2.92 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Arabian and German Warmblood horses. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina equine SNP50 BeadChip and analyzed for guttural pouch tympany. |
| Analysis: | Multipoint non-parametric linkage analysis was performed. For GWAS, a mixed linear model was used. |
| Software: | PLINK, MERLIN, TASSEL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Metzger J, Ohnesorge B, Distl O |
| Affiliation: | Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Hannover, Germany |
| Title: | Genome-wide linkage and association analysis identifies major gene loci for guttural pouch tympany in Arabian and German warmblood horses |
| Journal: | PloS one, 2012, 7(7): e41640 |
| Links: |
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