| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 491.56 (cM) |
| QTL Span: | 491.56-491.56 (cM)
72.3-72.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs69602444 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 7.87E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Quarter Horse foals. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina EquineSNP70 BeadChip and analyzed for traits related to R. equi pneumonia. |
| Analysis: | Chi-square and mixed-effects logistic regression were used. |
| Software: | PLINK, GenABEL, S-PLUS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | McQueen CM, Doan R, Dindot SV, Bourquin JR, Zlatev ZZ, Chaffin MK, Blodgett GP, Ivanov I, Cohen ND |
| Affiliation: | Department of Large Animal Clinical Sciences, Texas A&M University College of Veterinary Medicine & Biomedical Sciences, College Station, Texas, United States of America |
| Title: | Identification of genomic loci associated with Rhodococcus equi susceptibility in foals |
| Journal: | PloS one, 2014, 9(6): e98710 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Clinical vs. unaffected |
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