| QTL Map Information |
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| Chromosome: | 22 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
25.9-25.9 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs395173162 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
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P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were 129 bay horses representing five different breeds: 39 Quarter Horses, 64 Arabians, 23 Persian Horses, 2 Standardbreds, and 1 Thoroughbred. |
| Breeds associated:
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| Design: | Horses were either genotyped using the Affymetrix Axiom Equine Genotyping Array or genotypes were extracted from whole-genome sequence data, and GWAS was performed for shade of bay coat color. A total of 331,084 SNPs were used for analysis. |
| Analysis: | Linear regression was used. |
| Software: | PLINK v1.90b4.1, R v3.4.1, Haploview, JMP 14.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Corbin LJ, Pope J, Sanson J, Antczak DF, Miller D, Sadeghi R, Brooks SA |
| Affiliation: | Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK |
| Title: | An Independent Locus Upstream of ASIP Controls Variation in the Shade of the Bay Coat Colour in Horses |
| Journal: | Genes, 2020, 11(6):606 |
| Links: |
PubMed | Abstract | List all data
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