| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
187.7-187.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs315318267 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.0001 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Polverara White and Polverara Black chickens. |
| Breeds associated:
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| Design: | Birds were genotyped using the Affymetrix Axiom 600K Chicken Genotyping Array and analyzed for plumage color. A total of 283,893 SNPs were used for analysis. |
| Analysis: | GWAS was performed using a univariate case-control model. A genome-wide fixation index (F(ST)) case-control analysis was also performed. |
| Software: | PLINK, SNPASSOC in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Mastrangelo S, Cendron F, Sottile G, Niero G, Portolano B, Biscarini F, Cassandro M |
| Affiliation: | Dipartimento di Agronomia Animali Alimenti Risorse naturali e Ambiente, University of Padova, 35020 Legnaro, Italy |
| Title: | Genome-wide Analyses Identifies Known and New Markers Responsible of Chicken Plumage Color |
| Journal: | Animals : an open access journal from MDPI, 2020, 10(3) |
| Links: |
PubMed | Abstract | List all data
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