| QTL Map Information |
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| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
68.4-68.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs14373198 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.98E-06 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ATG5 (autophagy related 5) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from a yellow-feather dwarf broiler chicken population. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using either the Affymetrix 600K Axiom HD genotyping array or 55K array, with data imputed to whole genome sequence, and analyzed for residual feed intake and its component traits. A total of 11,173,020 SNPs were used for analysis. |
| Analysis: | Mixed models were used. |
| Software: | VCFtools, Beagle 4.1, PLINK, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ye S, Chen ZT, Zheng R, Diao S, Teng J, Yuan X, Zhang H, Chen Z, Zhang X, Li J, Zhang Z |
| Affiliation: | Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China |
| Title: | New Insights From Imputed Whole-Genome Sequence-Based Genome-Wide Association Analysis and Transcriptome Analysis: The Genetic Mechanisms Underlying Residual Feed Intake in Chickens |
| Journal: | Frontiers in genetics, 2020, 11: 243 |
| Links: |
PubMed | Abstract | List all data
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