| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
2.2-2.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs313196595 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.05E-8 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | BRD2 (bromodomain containing 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Chickens were from an F2 population constructed by crossing broilers with high abdominal fat content Baier layers (Chinese native breed). |
| Breeds associated:
n/a
|
| Design: | Whole-genome sequencing was carried out, and GWAS was performed for internal organ traits. A total of 7,890,258 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | GCTa v1.93.2, SAMtools, Beagle 4.0, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li Y, Liu X, Bai X, Wang Y, Leng L, Zhang H, Li Y, Cao Z, Luan P, Xiao F, Gao H, Sun Y, Wang N, Li H, Wang S |
| Affiliation: | Key Laboratory of Chicken Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Harbin, P.R. China |
| Title: | Genetic parameters estimation and genome-wide association studies for internal organ traits in an F2 chicken population |
| Journal: | Journal of animal breeding and genetics , 2022, 139(4):434-446 |
| Links: |
PubMed | Abstract | List all data
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