| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
51.4-51.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs312759238 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.61E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Chickens were from either a back-cross population or an advanced intercross line population from crosses of two inbred White Leghorn lines. |
| Breeds associated:
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| Design: | Birds were genotyped for 1212 SNPs (back-cross) or 286,432 SNPs (advanced intercross) and analyzed for susceptibility to Campylobacter jejuni intestinal colonization. |
| Analysis: | For the back-cross population, QTL mapping was first performed using regression interval mapping. In both populations, GWAS was performed using a univariate linear mixed model. |
| Software: | QTL Express, GEMMA, ASReml, PLINK, Haploview, GenABEL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Psifidi A, Fife M, Howell J, Matika O, van Diemen P M, Kuo R, Smith J, Hocking P M, Salmon N, Jones M A, Hume D A, Banos G, Stevens M P, Kaiser P |
| Affiliation: | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK |
| Title: | The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens |
| Journal: | BMC genomics, 2016, 17(1): 293 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 5 dpi; AIL population; continuous data |
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