| QTL Map Information |
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| Chromosome: | 2 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
135.0-135.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs398681238 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were lambs from four flocks in New Zealand. Dams were composites of Romney, Coopworth, Perendale, and Texel. Sires were a mixture of dual-purpose and terminal sire composites. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina Ovine Infinium HD SNP BeadChip and analyzed for pneumonic lesions and pleurisy incidence. A total of 537,117 SNPs were used for analysis. |
| Analysis: | GWAS was performed using 1) Efficient Mixed-Model Association eXpedited (EMMAX) using identity-by-state, and 2) haplotype trend regression with a 3-SNP sliding window. |
| Software: | SVS v8.4.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | McRae KM, Rowe SJ, Baird HJ, Bixley MJ, Clarke SM |
| Affiliation: | AgResearch Invermay, Private Bag, Mosgiel, New Zealand |
| Title: | Genome-wide association study of lung lesions and pleurisy in New Zealand lambs |
| Journal: | Journal of animal science, 2019, 96(11): 4512-4520 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | HTR analysis |
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