| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 175.53 (cM) |
| QTL Span: | 175.53-175.53 (cM)
130.1-130.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs416059597 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.00438530697775 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Red Maasai x Dorper backcross sheep. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina OvineSNP50 BeadChip and analyzed for gastrointestinal parasite resistance traits. A total of 31,686 SNPs were used for analysis. |
| Analysis: | An efficient mixed-model association (EMMA) algorithm after optimization was used for GWAS. |
| Software: | BLUPf90, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Benavides MV, Sonstegard TS, Kemp S, Mugambi JM, Gibson JP, Baker RL, Hanotte O, Marshall K, Van Tassell C |
| Affiliation: | Animal Genomics & Improvement Laboratory, USDA/ARS/Beltsville Agricultural Research Center, Beltsville, MD, United States of America |
| Title: | Identification of novel loci associated with gastrointestinal parasite resistance in a Red Maasai x Dorper backcross population |
| Journal: | PloS one, 2016, 10(4): e0122797 |
| Links: |
PubMed | Abstract | List all data
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