| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
40.3-40.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs427802479 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
LOD_score | 9.8696 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Hu sheep. |
| Breeds associated:
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| Design: | Animals were genotyped using the Affymetrix Genomic GeneSeek Profiler Ovine HD 630K array, and GWAS was performed for teat number. |
| Analysis: | Single-locus GWAS was performed using a linear mixed model. Multi-locus GWAS was carried out using several methods, including FASTmrMLM, pLARmEB, pKWmEB, and ISIS EM-BLASSO. |
| Software: | PLINK v1.90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhao Y, Pu Y, Liang B, Bai T, Liu Y, Jiang L, Ma Y |
| Affiliation: | National Germplasm Center of Domestic Animal Resources, Institute of Animal Science (IAS), Chinese Academy of Agricultural Sciences (CAAS), Haidian, Beijing, China |
| Title: | A study using single-locus and multi-locus genome-wide association study to identify genes associated with teat number in Hu sheep |
| Journal: | Animal Genetics, 2022, 53(2):203-211 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | FASTmrMLM, ISIS EM-BLASSO methods |
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