| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
66.8-66.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs159679642 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.04E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #287832
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Katahdin and Blackbelly hair sheep, Merino, Polypay, and other wool sheep from European-influenced breeds. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Illumina OvineHD or OvineSNP50 (with data imputed to HD), and GWAS was performed for footrot incidence. A total of 515,635 SNPs were used for analysis. |
| Analysis: | Mixed models were used. |
| Software: | PLINK v1.9, R software, Beagle v5.0, SVS v8 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cinar MU, Oliveira RD, Hadfield TS, Lichtenwalner A, Brzozowski RJ, Settlemire CT, Schoenian SG, Parker C, Neibergs HL, Cockett NE, White SN |
| Affiliation: | Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, United States |
| Title: | Genome-wide association with footrot in hair and wool sheep |
| Journal: | Frontiers in Genetics, 2024, 14: 1297444 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #38288162
Add your comments
Note similar findings
Note contradictions
|
