| QTL Map Information |
|---|
| Chromosome: | 24 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
16.9-16.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs161425032 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Portuguese Merino sheep. |
| Breeds associated:
|
| Design: | Animals were genotyped using a custom SNP panel, and GWAS was performed for footrot susceptibility. A total of 29,716 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | PLINK v1.90b5.2, Beagle v5.4, rrBLUP v4.6.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Gaspar D, Ginja C, Carolino N, Leão C, Monteiro H, Tábuas L, Branco S, Padre L, Caetano P, Romão R, Matos C, Ramos AM, Bettencourt E, Usié A |
| Affiliation: | Centro de Biotecnologia Agrícola E Agro-Alimentar Do Alentejo (CEBAL)/ Instituto Politécnico de Beja (IPBeja), 7801-908, Beja, Portugal |
| Title: | Genome-wide association study identifies genetic variants underlying footrot in Portuguese Merino sheep |
| Journal: | BMC Genomics, 2024, 25(1): 100 |
| Links: |
PubMed | Abstract | List all data
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