| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs2711265389 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.95E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Rainbow trout were from an outbred population of 60 half-sibling families. |
| Breeds associated:
n/a
|
| Design: | Fish were genotyped using the Affymetrix 57K SNP array and association analysis was performed for Aeromonas salmonicida resistance traits. A total of 32,205 SNPs were used for analysis. |
| Analysis: | Restricted maximum likelihood and a leave-one-chromosome-out (LOCO) GWAS were used. |
| Software: | GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Marana MH, Karami AM, Ødegård J, Zuo S, Jaafar RM, Mathiessen H, von Gersdorff Jørgensen L, Kania PW, Dalsgaard I, Nielsen T, Buchmann K |
| Affiliation: | Laboratory of Aquatic Pathobiology, Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C., Copenhagen, Denmark |
| Title: | Whole-genome association study searching for QTL for Aeromonas salmonicida resistance in rainbow trout |
| Journal: | Scientific reports, 2021, 11(1): 17857 |
| Links: |
PubMed | Abstract | List all data
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