| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 144.75 (cM) |
| QTL Span: | 144.75-144.75 (cM)
147.7-147.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81475989 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 5.1% | | P_values | 2.90E-3 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from an F2 Duroc x Pietrain resource population. |
| Breeds associated:
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| Design: | Animals were either genotyped using the Illumina PorcineSSNP60 BeadChip, or had low-density genotypes imputed to 60K, and were analyzed for meat quality and carcass traits. |
| Analysis: | A GBLUP-based GWAS was performed using an animal-centric Gaussian linear mixed model. |
| Software: | FImpute, gwaR package |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Casiró S, Velez-Irizarry D, Ernst C W, Raney N E, Bates R O, Charles M G, Steibel J P |
| Affiliation: | Department of Animal Science/Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA |
| Title: | Genome-wide association study in an F2 Duroc x Pietrain resource population for economically important meat quality and carcass traits |
| Journal: | Journal of animal science, 2017, 95(2): 545-558 |
| Links: |
PubMed | Abstract | List all data
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