| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 56.31-56.31 (cM)
116.8-116.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs329145797 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.29% | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were multiparous Landrace and Yorkshire sows. |
| Breeds associated:
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| Design: | Genotyping by sequence was performed based on IlluminaHiSeq PE150. A total of 167,355 SNPs were used for analysis of association with reproductive traits. |
| Analysis: | A ssGBLUP approach was used for GWAS. |
| Software: | GATK, DMU, qqman in R, BIOMART |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wu P, Yang Q, Wang K, Zhou J, Ma J, Tang Q, Jin L, Xiao W, Jiang A, Jiang Y, Zhu L, Li X, Tang G |
| Affiliation: | Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China |
| Title: | Single step genome-wide association studies based on genotyping by sequence data reveals novel loci for the litter traits of domestic pigs |
| Journal: | Genomics, 2018, 110(3):171-179 |
| Links: |
PubMed | Abstract | List all data
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