| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 70.12 (cM) |
| QTL Span: | 70.12-70.12 (cM)
72.0-72.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81219805 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.020264 | | Dominance effect: | -0.014 |
| Additive effect: | 0.1138 |
| Associated Gene: | PLOD1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #17703
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were from an F2 population of Duroc x Landrace pigs or a resource population of Yorkshire/Landrace/Duroc pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped for 170 SNPs and 28 microsatellites and analyzed for back curvature. |
| Analysis: | Whole-genome association analysis was performed to identify areas associated with kyphosis. Positional candidate genes were selected and further association analysis was carried out using SNPs in 16 genes. |
| Software: | GenoProb, MTDFREML, Mendel 8.0.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lindholm-Perry AK, Rohrer GA, Kuehn LA, Keele JW, Holl JW, Shackelford SD, Wheeler TL, Nonneman DJ |
| Affiliation: | USDA, ARS, U,S, Meat Animal Research Center, Clay Center, NE 68933-0166, USA |
| Title: | Genomic regions associated with kyphosis in swine |
| Journal: | BMC genetics, 2010, 11:112 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #21176156
Add your comments
Note similar findings
Note contradictions
|
