| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 81.46 (cM) |
| QTL Span: | 81.46-81.46 (cM)
115.0-115.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80879226 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | COL17A1 (collagen type XVII alpha 1 chain) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip v2 and analyzed for iris pigmentation and heterochromia patterns. Multiple GWAS were performed. |
| Analysis: | Linear mixed effect models were used. |
| Software: | PLINK, GenABEL in R, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Moscatelli G, Bovo S, Schiavo G, Mazzoni G, Bertolini F, Dall'Olio S, Fontanesi L |
| Affiliation: | Division of Animal Sciences, Department of Agricultural and Food Sciences, University of Bologna, Viale G. Fanin 46, 40127, Bologna, Italy |
| Title: | Genome-wide association studies for iris pigmentation and heterochromia patterns in Large White pigs |
| Journal: | Anim Genet, 2020, 51(3): 409-419 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | GWAS4 – pigs with heterochromia iridis vs. pigs with completely brown eyes |
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