| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 41.40 (cM) |
| QTL Span: | 40.20-42.61 (cM)
28.7-30.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs80942265 |
| Peak: | rs81228492 |
| Lower, "Significant": | rs81228492 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SPDEF (SAM pointed domain containing ets transcription factor) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were White Duroc x Erhualian pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for hematological traits. Following quality control, 39622 SNPs were used in the final analysis. |
| Analysis: | A general linear mixed model was used. |
| Software: | GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang Z, Hong Y, Gao J, Xiao S, Ma J, Zhang W, Ren J, Huang L |
| Affiliation: | Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang, China. |
| Title: | Genome-wide association study reveals constant and specific loci for hematological traits at three time stages in a White Duroc x Erhualian F2 resource population. |
| Journal: | PloS one, 2013, 8 (5): e63665 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 240 days |
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