Release 56
(Apr 24, 2025)

QTL 22167 Description:

 Trait Information
Trait name: Lymphocyte percentage Vertebrate Trait Ontology: Lymphocyte quantity
Reported name: Lymphocyte percentage Product Trait Ontology: n/a
Symbol: LYMPHP Clinical Measurement Ontology: Blood lymphocyte count to total leukocyte count ratio
 QTL Map Information
Chromosome:18
QTL Peak Location:7.75 (cM)
QTL Span:7.75-7.75 (cM)
5.6-5.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs334124707
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:GALNTL5 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were White Duroc x Erhualian pigs.
     Breeds associated:
    Design:Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for hematological traits. Following quality control, 39622 SNPs were used in the final analysis.
    Analysis:A general linear mixed model was used.
    Software:GenABEL in R
    Notes: 
    Links:Edit

     Reference
    Authors:Zhang Z, Hong Y, Gao J, Xiao S, Ma J, Zhang W, Ren J, Huang L
    Affiliation:Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang, China.
    Title:Genome-wide association study reveals constant and specific loci for hematological traits at three time stages in a White Duroc x Erhualian F2 resource population.
    Journal:PloS one, 2013, 8 (5): e63665
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:Longitudinal GWAS
    User inputs on reference #23691082
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  • Cite this Data:

    Animal QTLdb: QTL22167 was published in 2013, and was curated into QTLdb on 2013-10-24. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:22167

     

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