| QTL Map Information |
|---|
| Chromosome: | 8 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
121.8-121.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81404101 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.59E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #222840
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were feral swine. |
| Breeds associated:
n/a
|
| Design: | A case-control GWAS was performed to identify loci associated with differential antibody responses after natural infection with B. suis. Animals were genotyped using the GeneSeek Genomic Profiler for Porcine bead array. A total of 53,162 SNPs were used for analysis. |
| Analysis: | Single-locus GWAS were performed using efficient mixed-model association eXpedited (EMMAX) methodology. |
| Software: | SVS, PLINK 1.9 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Pierce CF, Brown VR, Olsen SC, Boggiatto P, Pedersen K, Miller RS, Speidel SE, Smyser TJ |
| Affiliation: | United States Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services, National Wildlife Research Center, Fort Collins, CO, United States |
| Title: | Loci Associated With Antibody Response in Feral Swine (Sus scrofa) Infected With Brucella suis |
| Journal: | Frontiers in veterinary science, 2020, 7: 554674 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | dominant model |
User inputs on reference #33324693
Add your comments
Note similar findings
Note contradictions
|
