| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
9.1-9.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs344314583 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.38E-8 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SNX9 (sorting nexin 9) |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred Chinese Qingyu pigs. |
| Breeds associated:
n/a
|
| Design: | Animals were subjected to whole-genome sequencing and association analysis was performed for meat quality traits. A total of 18,436,759 SNPs were used for analysis. |
| Analysis: | Single-marker regression analysis was performed using a univariate linear mixed model. |
| Software: | GATK, VCFtools, GEMMA, DMU |
| Notes: | |
| Reference |
|---|
| Authors: | Wu P, Wang K, Zhou J, Chen D, Yang X, Jiang A, Shen L, Zhang S, Xiao W, Jiang Y, Zhu L, Zeng Y, Xu X, Li X, Tang G |
| Affiliation: | Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, Sichuan, China |
| Title: | Whole-genome sequencing association analysis reveals the genetic architecture of meat quality traits in Chinese Qingyu pigs |
| Journal: | Genome, 2020, 63(10): 503-515 |
| Links: |
PubMed | Abstract | List all data
|
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