| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
139.6-139.6 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs329916914 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Yunong-black pigs, a crossbred population formed by the hybridization of Duroc, Erhualian, Laiwu, Lulai, Nanyang, and Yunan pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP50 BeadChip, and GWAS was performed for body size traits using both 50K data and imputed whole-genome sequence data. |
| Analysis: | Linear mixed models were used for GWAS. |
| Software: | R software, SAMtools v1.11, Beagle v5.0, BCFtools v1.8, VCFtools v0.1.16, GCTA v1.93.2, GEMMA v0.96 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li C, Duan D, Xue Y, Han X, Wang K, Qiao R, Li XL, Li XJ |
| Affiliation: | College of Animal Sciences and Technology, Henan Agricultural University, Zhengzhou, Henan, China |
| Title: | An association study on imputed whole-genome resequencing from high-throughput sequencing data for body traits in crossbred pigs |
| Journal: | Animal Genetics, 2022, 53(2):212-219 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Imputed data |
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