| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs340089436 |
| Peak: | |
| Lower, "Significant": | rs321338191 |
| Lower, "Suggestive": | n/a |
| Marker type: | Haplotype |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | - |
| Threshold significance level: | Significant |
 |
P_values | 0.00000000000000 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CCND2 (cyclin D2) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #258008
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were from five pig populations: Synthetic (Large White-based), Pietrain, Landrace, Large White, and Duroc. |
| Breeds associated:
|
| Design: | Animals were genotyped using varying SNP chips, with medium-density genotypes imputed to HD, and association analysis was performed for backfat thickness. |
| Analysis: | A linear animal model was used for single-SNP GWAS. Subsequently, a haplotype-based association analysis was performed using the same mixed model. Further, eQTL analysis was performed for the identified lead SNP. |
| Software: | GCTA, ASReml v3.0, Beagle v5.1, SAMtools v1.9 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Oliveira HC, Derks MFL, Lopes MS, Madsen O, Harlizius B, van Son M, Grindflek EH, Gòdia M, Gjuvsland AB, Otto PI, Groenen MAM, Guimaraes SEF |
| Affiliation: | Department of Animal Science, Universidade Federal de Viçosa, Viçosa, Brazil |
| Title: | Fine Mapping of a Major Backfat QTL Reveals a Causal Regulatory Variant Affecting the CCND2 Gene |
| Journal: | Frontiers in Genetics, 2022, 13: 871516 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Synthetic population |
User inputs on reference #35692822
Add your comments
Note similar findings
Note contradictions
|
