| QTL Map Information |
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| Chromosome: | 11 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs330502011 |
| Peak: | |
| Lower, "Significant": | rs81266401 |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
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P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were American Duroc pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using the GeneSeek Porcine SNP50 BeadChip. CNV analyses and weighted single-step GWAS were used to identify regions association with carcass traits. |
| Analysis: | A linear mixed model was used for CNVR analysis. For weighted single-step GWAS, the ssGBLUP method with a mixed model was used. |
| Software: | PLINK v1.07, SAMTools, Picard Tools v2.7.1, PennCNV, CNVRuler v1.3.3.2, CNVnator, GEMMA, BLUPF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ding R, Zhuang Z, Qiu Y, Wang X, Wu J, Zhou S, Ruan D, Xu C, Hong L, Gu T, Zheng E, Cai G, Huang W, Wu Z, Yang J |
| Affiliation: | College of Animal Science and National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangdong, 510642, P.R. China |
| Title: | A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population. |
| Journal: | BMC Genomics, 2022, 23(1): 590 |
| Links: |
PubMed | Abstract | List all data
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