| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
66.2-66.2 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1110071002 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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P_values | 1.21E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were purebred Landrace, Yorkshire, and Duroc pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Chine Chip-1 Porcine SNP50 BeadChip, with data imputed to whole-genome sequence level, and GWAS were performed for backfat and loin muscle area. A total of 14,163,315 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used to conduct imputation-based GWAS. |
| Software: | SWIM, PLINK v1.90, GCTA, GEMMA, LDBlockShow v1.40 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li J, Wu J, Jian Y, Zhuang Z, Qiu Y, Huang R, Lu P, Guan X, Huang X, Li S, Min L, Ye Y |
| Affiliation: | Guangdong Guangken Animal Husbandry Group Co., Ltd., Guangzhou 510000, China |
| Title: | Genome-Wide Association Studies Revealed Significant QTLs and Candidate Genes Associated with Backfat and Loin Muscle Area in Pigs Using Imputation-Based Whole Genome Sequencing Data |
| Journal: | Animals : an open access journal from MDPI, 2022, 12(21):2911 |
| Links: |
PubMed | Abstract | List all data
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