| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
160.2-160.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs342002002 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Swiss Large White pigs. |
| Breeds associated:
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| Design: | Microarray-derived genotypes were obtained using five SNP panels with medium density, and data was imputed to sequence level. GWAS were performed for production, reproduction, and conformation traits. |
| Analysis: | Single-trait GWAS for 24 traits were conducted using a linear mixed model and either 40,382 array-derived SNPs or 16,051,635 imputed sequence variant genotypes. |
| Software: | PLINK v1.9, Beagle, GCTA v1.92.1, BWA v0.7.17, GATK v4.1.0, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Nosková A, Mehrotra A, Kadri NK, Lloret-Villas A, Neuenschwander S, Hofer A, Pausch H |
| Affiliation: | ETH Zürich, Universitätstrasse 2, 8092, Zürich, Switzerland |
| Title: | Comparison of two multi-trait association testing methods and sequence-based fine mapping of six additive QTL in Swiss Large White pigs |
| Journal: | BMC Genomics, 2023, 24(1): 192 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | GWAS based on imputed sequence variants |
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