| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
15.9-15.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs3472657825 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.52E-06 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #287028
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Dutch Large White pigs. |
| Breeds associated:
|
| Design: | Pigs were genotyped using a 50K SNP chip, with data imputed to sequence level, and GWAS was performed for teat number. a total of 5,710,885 SNPs were used for analysis. |
| Analysis: | A univariate mixed linear model was used. |
| Software: | PLINK v1.90, Beagle 5.2, HIBLUP v1.1.0, LDAK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Deng M, Qiu Z, Liu C, Zhong L, Fan X, Han Y, Wang R, Li P, Huang R, Zhao Q |
| Affiliation: | Key Laboratory in Nanjing for Evaluation and Utilization of Pigs Resources, Institute of Swine Science, Nanjing Agricultural University, Nanjing, China |
| Title: | Genome-wide association analysis revealed new QTL and candidate genes affecting the teat number in Dutch Large White pigs |
| Journal: | Animal Genetics, 2024, 55(2):206-216 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #38191772
Add your comments
Note similar findings
Note contradictions
|
