| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
75.7-75.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs341069826 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.86E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Yunong Black pigs. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip, and GWAS were performed for body measurement traits. A total of 36,309 SNPs were used for analysis. In addition, data were imputed to whole-genome sequence and 7,203,597 SNPs were used for analysis. |
| Analysis: | Additive genomic models and additive-dominance genomic models were used. |
| Software: | PLINK v1.90, SAMtools, BWA, Picard, BCFtools, Beagle, BLUPF90, GCTA v1.93.2, Haploview v4.2, SPSS 26.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wu Z, Dou T, Bai L, Han J, Yang F, Wang K, Han X, Qiao R, Li XL, Li XJ |
| Affiliation: | College of Animal Science and Technology, Henan Agricultural University, Zhengzhou, Henan, China |
| Title: | Genomic prediction and genome-wide association studies for additive and dominance effects for body composition traits using 50 K and imputed high-density SNP genotypes in Yunong-black pigs |
| Journal: | Journal of animal breeding and genetics, 2024, 141(2): 124-137 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | Significant for additive effect, imputed data |
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