| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | 42.87 (cM) |
| QTL Span: | 42.87-42.87 (cM)
46.3-46.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80943012 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SNX25 (sorting nexin 25) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from an F2 resource population created using Danish production breeds (Yorkshire and Duroc) sows and G�ttingen minipig boars. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for obesity-related traits. A total of 40,910 SNPs were used for analysis. |
| Analysis: | Regression was performed using a linear model. |
| Software: | GenABEL in R, ASReml, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Kogelman LJ, Pant SD, Fredholm M, Kadarmideen HN |
| Affiliation: | Animal Genetics, Bioinformatics and Breeding Section, Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Copenhagen, Denmark |
| Title: | Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network, and pathway analyses |
| Journal: | Frontiers in genetics, 2014, 5: 214 |
| Links: |
PubMed | Abstract | List all data
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