| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 143.81 (cM) |
| QTL Span: | 143.81-143.81 (cM)
146.5-146.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81392501 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for serum lipid levels at two different time points. A total of 37,960 SNPs were used for analysis. |
| Analysis: | Linear regression, efficient mixed-model association expedited (EMMAX), genome-wide rapid association using mixed model and regression (GRAMMAR), and genome-wide efficient mixed model association (GEMMA) were used. |
| Software: | PLINK, EMMAX software, GenABEL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Manunza A, Casellas J, Quintanilla R, González-Prendes R, Pena RN, Tibau J, Mercadé A, Castelló A, Aznárez N, Hernández-Sánchez J, Amills M |
| Affiliation: | Department of Animal Genetics, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Universitat Autňnoma de Barcelona, Bellaterra 08193, Spain |
| Title: | A genome-wide association analysis for porcine serum lipid traits reveals the existence of age-specific genetic determinants |
| Journal: | BMC genomics, 2014, 15: 758 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 190 days; linear regression approach |
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