| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | 116.27 (cM) |
| QTL Span: | 116.27-116.27 (cM)
53.5-53.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs328962961 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | RANGRF (RAN guanine nucleotide release factor) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White sows. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for stillbirth and teat number. A total of 41,647 SNPs were used for analysis. |
| Analysis: | Two GBLUP models were fitted to the data under a Bayesian framework; one model assumes the traits follow a Gaussian distribution and the other assumes the traits follow a Poisson distribution. A general linear model was used. |
| Software: | R software, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Verardo LL, Silva FF, Lopes MS, Madsen O, Bastiaansen JWM, Knol EF, Kelly M, Varona L, Lopes PS, Guimarães SEF |
| Affiliation: | Department of Animal Science, Universidade Federal de Viçosa, Viçosa, 36570000, Brazil |
| Title: | Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways |
| Journal: | Genetics, Selection, Evolution : GSE, 2016, 48(1): 9 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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