A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
PSMB5 location ⇒ 7:82378991-82378682   CU468526,CH242-14D10,7:82367422-82382617
(Clone quality: bE14D10 on chr=7; Num_of_Contigs=8; )
PSMB5 location ⇒ 7:82380229-82380010   CU468526,CH242-14D10,7:82367422-82382617
(Clone quality: bE14D10 on chr=7; Num_of_Contigs=8; )
PSMB6 ENSSSCG00000017913 12:49291013-49292996   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
PSMB6 location ⇒ 12:49291231-49291017   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
PSMB6 location ⇒ 12:49291501-49291352   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
PSMB6 location ⇒ 12:49291830-49291697   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
PSMB6 location ⇒ 12:49292073-49291941   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
PSMB7 ENSSSCG00000005590 1:280011355-280074547    
PSMB7 location ⇒ 1:280011597-280011365   CU633730,CH242-82E3,1:280001860-280055196
(Clone quality: bE82E3 on chr=1; Num_of_Contigs=5; )
PSMB7 location ⇒ 1:280014910-280014755   CU633730,CH242-82E3,1:280001860-280055196
(Clone quality: bE82E3 on chr=1; Num_of_Contigs=5; )
PSMB7 location ⇒ 1:280063726-280063606   CU633730,CH242-82E3,1:280055297-280090324
(Clone quality: bE82E3 on chr=1; Num_of_Contigs=5; )
PSMB7 location ⇒ 1:280071349-280071207   CU633730,CH242-82E3,1:280055297-280090324
(Clone quality: bE82E3 on chr=1; Num_of_Contigs=5; )
PSMB8 ENSSSCG00000001461 7:29329049-29437913    
PSMB8 location ⇒ 7:21595-21676   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
PSMB8 location ⇒ 7:24861-24974   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
PSMB8 location ⇒ 7:4758-4665   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
PSMB8 location ⇒ 7:4758-4665   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
PSMB9 ENSSSCG00000001468 7:29448026-29453222 BX323833,PigI-554F3,7:29352096-29473578
(No clone quality info on bS554F3) 		 
PSMB9 ENSSSCG00000001463 7:29342791-29347827 CU633196,CH242-203E5,7:29272940-29352095
(Clone quality: bE203E5 on chr=7; Num_of_Contigs=1; ) 		 
PSMC1 ENSSSCG00000002433 7:119883741-119903775   CT737375,CH242-180K22,7:119862665-119936789
(Clone quality: bE180K22 on chr=7; Num_of_Contigs=5; )
PSMC1 location ⇒ 4:83444208-83443704   CU138499,CH242-69B4,4:83380037-83523080
(Clone quality: bE69B4 on chr=4; Num_of_Contigs=1; )
PSMC2 ENSSSCG00000015424 9:96405054-96417850   CU570825,CH242-232P7,9:96290209-96447239
(Clone quality: bE232P7 on chr=9; Num_of_Contigs=1; )
PSMC2 location ⇒ 9:96405109-96405249   CU570825,CH242-232P7,9:96290209-96447239
(Clone quality: bE232P7 on chr=9; Num_of_Contigs=1; )
PSMC2 location ⇒ 9:96414526-96414691   CU570825,CH242-232P7,9:96290209-96447239
(Clone quality: bE232P7 on chr=9; Num_of_Contigs=1; )
PSMC2 location ⇒ 9:96417070-96417275   CU570825,CH242-232P7,9:96290209-96447239
(Clone quality: bE232P7 on chr=9; Num_of_Contigs=1; )
PSMC2 location ⇒ 9:96417543-96417899   CU570825,CH242-232P7,9:96290209-96447239
(Clone quality: bE232P7 on chr=9; Num_of_Contigs=1; )
PSMC3 ENSSSCG00000017396 12:17801019-17806889   FP016109,CH242-242A5,12:17788506-17858714
(Clone quality: bE242A5 on chr=12; Num_of_Contigs=4; )
PSMC3 ENSSSCG00000013239 2:13291220-13296948   CU856312,CH242-38I7,2:13257671-13307229
(Clone quality: bE38I7 on chr=2; Num_of_Contigs=10; )
PSMC3 location ⇒ 2:13291442-13291258   CU856312,CH242-38I7,2:13257671-13307229
(Clone quality: bE38I7 on chr=2; Num_of_Contigs=10; )
PSMC3 location ⇒ 2:13292668-13292521   CU856312,CH242-38I7,2:13257671-13307229
(Clone quality: bE38I7 on chr=2; Num_of_Contigs=10; )
PSMC3 location ⇒ 2:13293857-13293707   CU856312,CH242-38I7,2:13257671-13307229
(Clone quality: bE38I7 on chr=2; Num_of_Contigs=10; )
PSMC3 location ⇒ 2:13296931-13296681   CU856312,CH242-38I7,2:13257671-13307229
(Clone quality: bE38I7 on chr=2; Num_of_Contigs=10; )
PSMC3IP   ENSSSCG00000017396 12:17801019-17806889   FP016109,CH242-242A5,12:17788506-17858714
(Clone quality: bE242A5 on chr=12; Num_of_Contigs=4; )
PSMC5 ENSSSCG00000017287 12:12674651-12679025   CU466386,CH242-271O11,12:12667512-12704427
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
PSMC5 location ⇒ 12:12675696-12675502   CU466386,CH242-271O11,12:12667512-12704427
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
PSMC5 location ⇒ 12:12675917-12675788   CU466386,CH242-271O11,12:12667512-12704427
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
PSMC5 location ⇒ 12:12676464-12676233   CU466386,CH242-271O11,12:12667512-12704427
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
PSMC5 location ⇒ 12:12679115-12678944   CU466386,CH242-271O11,12:12667512-12704427
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
PSMC6 ENSSSCG00000005038 1:190796275-190822069   CU407115,CH242-342H5,1:190778660-191001332
(Clone quality: bE342H5 on chr=1; Num_of_Contigs=1; )
PSMC6 location ⇒ 1:190808098-190808225   CU407115,CH242-342H5,1:190778660-191001332
(Clone quality: bE342H5 on chr=1; Num_of_Contigs=1; )
PSMC6 location ⇒ 1:190821564-190822062   CU407115,CH242-342H5,1:190778660-191001332
(Clone quality: bE342H5 on chr=1; Num_of_Contigs=1; )
PSMC6 location ⇒ 1:226760766-226760698   CU302244,CH242-254J19,1:226615674-226772700
(Clone quality: bE254J19 on chr=1; Num_of_Contigs=1; )
PSMC6 location ⇒ 1:226786541-226786473   CU861563,CH242-39E11,1:226772701-226787342
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
PSMD1 ENSSSCG00000016272 15:124295482-124399326    
PSMD1 location ⇒ 15:124370741-124370542   CU463148,CH242-439L13,15:124349971-124395504
(Clone quality: bE439L13 on chr=15; Num_of_Contigs=7; )
PSMD1 location ⇒ 15:124373391-124373216   CU463148,CH242-439L13,15:124349971-124395504
(Clone quality: bE439L13 on chr=15; Num_of_Contigs=7; )
PSMD1 location ⇒ 15:124379665-124379435   CU463148,CH242-439L13,15:124349971-124395504
(Clone quality: bE439L13 on chr=15; Num_of_Contigs=7; )
PSMD1 location ⇒ 15:124388019-124387811   CU463148,CH242-439L13,15:124349971-124395504
(Clone quality: bE439L13 on chr=15; Num_of_Contigs=7; )
PSMD10 ENSSSCG00000012568 X:86716313-86724005   CU463012,CH242-276J1,X:86710402-86732969
(Clone quality: bE276J1 on chr=X; Num_of_Contigs=7; )
PSMD10 location ⇒ X:86716770-86716616   CU463012,CH242-276J1,X:86710402-86732969
(Clone quality: bE276J1 on chr=X; Num_of_Contigs=7; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-21

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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