A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Records 9101 - 9200:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
POLR1E   ENSSSCG00000005347 1:249540389-249559980    
POLR2F   ENSSSCG00000000116 5:6459605-6471865   CU633351,CH242-161B9,5:6445792-6484454
(Clone quality: bE161B9 on chr=5; Num_of_Contigs=5; )
POLR2I   ENSSSCG00000002925 6:30574746-30576279   CU694686,CH242-213I9,6:30551266-30589235
(Clone quality: bE213I9 on chr=6; Num_of_Contigs=4; )
POLR2K   ENSSSCG00000009813 14:31242892-31243065   CU693466,CH242-414G9,14:31207443-31256880
(Clone quality: bE414G9 on chr=14; Num_of_Contigs=9; )
POLR2L   ENSSSCG00000000461 5:27983176-27983379   CU633380,CH242-260D22,5:27907609-28003514
(Clone quality: bE260D22 on chr=5; Num_of_Contigs=3; )
POLR3A   ENSSSCG00000010327 14:83778643-83836718   CU407090,CH242-515L11,14:83754163-83877970
(Clone quality: bE515L11 on chr=14; Num_of_Contigs=4; )
POLR3B   ENSSSCG00000000169 5:12043411-12215568    
POLR3C   ENSSSCG00000006691 4:103565894-103577132   CU606940,CH242-153I6,4:103564526-103582920
(Clone quality: bE153I6 on chr=4; Num_of_Contigs=12; )
POLR3D   ENSSSCG00000009622 14:6474013-6480810   CU468634,CH242-272G24,14:6407691-6485927
(Clone quality: bE272G24 on chr=14; Num_of_Contigs=7; )
POLR3E   ENSSSCG00000007840 3:21672716-21694067   CU972409,CH242-221O18,3:21666086-21697171
(Clone quality: bE221O18 on chr=3; Num_of_Contigs=8; )
POLR3F   ENSSSCG00000007095 17:27462320-27479733   CU914246,CH242-1M4,17:27449366-27480603
(Clone quality: bE1M4 on chr=17; Num_of_Contigs=3; )
POLR3G   ENSSSCG00000014153 2:87185644-87213285    
POLR3GL   ENSSSCG00000006682 4:103449825-103462674    
POLR3H   ENSSSCG00000000063 5:3542222-3556797    
POLR3K   ENSSSCG00000012145 X:12426341-12426658   CU463983,CH242-19L11,X:12370686-12440116
(Clone quality: bE19L11 on chr=X; Num_of_Contigs=9; )
POLS   ENSSSCG00000017102 16:72599429-72613225    
POM121L2   ENSSSCG00000001162 7:22580081-22583161   CU468307,CH242-119B12,7:22568472-22710799
(Clone quality: bE119B12 on chr=7; Num_of_Contigs=3; )
POMT1   ENSSSCG00000005716 1:286831233-286846686 CU914430,CH242-421J21,1:286815524-286859256
(Clone quality: bE421J21 on chr=1; Num_of_Contigs=8; ) 		 
POMT2   ENSSSCG00000002397 7:108349235-108366918    
PON1 ENSSSCG00000015332 9:70200746-70266651    
PON2   ENSSSCG00000015331 9:70176701-70195601    
POP1   ENSSSCG00000006078 4:38815803-38854887    
POP4   ENSSSCG00000002854 6:26930676-26940826   FP102582,CH242-162B21,6:26929829-26942692
(Clone quality: bE162B21 on chr=6; Num_of_Contigs=12; )
POP5   ENSSSCG00000009912 14:40587125-40589363   CU062553,CH242-319N22,14:40577284-40626929
(Clone quality: bE319N22 on chr=14; Num_of_Contigs=5; )
POP7   ENSSSCG00000007672 3:6903969-6904391   FP102710,CH242-46P3,3:6895448-6951193
(Clone quality: bE46P3 on chr=3; Num_of_Contigs=3; )
POPDC2   ENSSSCG00000011894 13:105363332-105382558   CU607003,CH242-303J2,13:105344285-105449516
(Clone quality: bE303J2 on chr=13; Num_of_Contigs=5; )
POPDC3   ENSSSCG00000004367 1:74921091-74940466    
POSTN ENSSSCG00000009361 11:12850024-12883428 CT476832,XX-BE284E13,11:12812461-12993238
(No clone quality info on bE284E13) 		 
POT1   ENSSSCG00000016597 18:21034427-21172396    
POU1F1 ENSSSCG00000011996 13:123180720-123196835   CU633644,CH242-171D11,13:123151316-123247028
(Clone quality: bE171D11 on chr=13; Num_of_Contigs=4; )
POU2AF1 ENSSSCG00000015016 9:37982388-37983385   CU856590,CH242-307A12,9:37981605-37996929
(Clone quality: bE307A12 on chr=9; Num_of_Contigs=14; )
POU2F1 ENSSSCG00000006310 4:86901332-87080880    
POU3F1 ENSSSCG00000003646 6:63602998-63604350 CR956424,PigE-234J24,6:63579214-63695944
(No clone quality info on bT234J24) 		 
POU3F2   ENSSSCG00000004346 1:69227153-69228481   CU210878,CH242-212K4,1:69227011-69237774
(Clone quality: bE212K4 on chr=1; Num_of_Contigs=4; )
POU3F4   ENSSSCG00000012454 X:65918824-65919909 CU570742,CH242-347F19,X:65773938-65937119
(Clone quality: bE347F19 on chr=X; Num_of_Contigs=2; ) 		 
POU4F2   ENSSSCG00000009034 8:70669364-70670341   CU861643,CH242-82F18,8:70668976-70728788
(Clone quality: bE82F18 on chr=8; Num_of_Contigs=9; )
POU4F3   ENSSSCG00000014412 2:133822190-133823522   FP236569,CH242-244C12,2:133816282-133826039
(Clone quality: bE244C12 on chr=2; Num_of_Contigs=5; )
POU5F1 ENSSSCG00000001393 7:27522888-27528681 CT737281,CH242-102G9,7:27394698-27581746
(Clone quality: bE102G9 on chr=7; Num_of_Contigs=3; ) 		 
POU6F1   ENSSSCG00000000220 5:15176248-15197625    
POU6F2   ENSSSCG00000016770 18:53342179-53395054    
PPA1 ENSSSCG00000010261 14:76072390-76091726   CU468481,CH242-304F15,14:76046170-76093978
(Clone quality: bE304F15 on chr=14; Num_of_Contigs=5; )
PPAP2A   ENSSSCG00000016912 16:32232371-32330560    
PPAP2B ENSSSCG00000003839 6:110702440-110780173    
PPAP2C   ENSSSCG00000014004 2:67170969-67182491 CU984591,CH242-288L4,2:67138955-67197804
(Clone quality: bE288L4 on chr=2; Num_of_Contigs=6; ) 		 
PPAPDC1A   ENSSSCG00000010691 14:136290730-136440683    
PPAPDC1B   ENSSSCG00000015819 15:45828222-45833734   CU570721,CH242-1H2,15:45819566-45835855
(Clone quality: bE1H2 on chr=15; Num_of_Contigs=6; )
PPAPDC2   ENSSSCG00000005220 1:227406552-227407454   CU041279,CH242-42M5,1:227392311-227411627
(Clone quality: bE42M5 on chr=1; Num_of_Contigs=7; )
PPAPDC3   ENSSSCG00000005713 1:286512638-286513147   CU928974,CH242-58K9,1:286511934-286514293
(Clone quality: bE58K9 on chr=1; Num_of_Contigs=32; )
PPAPR3   ENSSSCG00000005393 1:254350768-254688760    
PPAPR5   ENSSSCG00000006876 4:123750178-123899065    
PPARA ENSSSCG00000000006 5:142391-161045    
PPARBP ENSSSCG00000017505 12:20802497-20902249    
PPARD ENSSSCG00000001539 7:35734820-35881353    
PPARG ENSSSCG00000011579 13:56728191-56859476    
PPARGC-1 ENSSSCG00000014437 2:136333826-136357749   CU914383,CH242-278F6,2:136264401-136403937
(Clone quality: bE278F6 on chr=2; Num_of_Contigs=5; )
PPARGC1B   ENSSSCG00000014437 2:136333826-136357749   CU914383,CH242-278F6,2:136264401-136403937
(Clone quality: bE278F6 on chr=2; Num_of_Contigs=5; )
PPEF2   ENSSSCG00000008972 8:60904184-60934482    
PPFIA1 ENSSSCG00000012866 2:1411757-1420165    
PPFIA2   ENSSSCG00000000940 5:94410183-94547079   CU633642,CH242-167I17,5:94386592-94554001
(Clone quality: bE167I17 on chr=5; Num_of_Contigs=1; )
PPFIA4   ENSSSCG00000015474 9:106759290-106794554    
PPFIBP1 ENSSSCG00000000549 5:44608561-44658126    
PPFIBP2   ENSSSCG00000014598 9:1352429-1460845    
PPHLN1   ENSSSCG00000000793 5:69649053-69763125    
PPIA ENSSSCG00000016737 18:49044555-49048126    
PPIB ENSSSCG00000004557 1:111189586-111195194   CU302261,CH242-182N21,1:111189543-111264608
(Clone quality: bE182N21 on chr=1; Num_of_Contigs=3; )
PPIB ENSSSCG00000004557 1:111189586-111195194   CU302261,CH242-182N21,1:111189543-111264608
(Clone quality: bE182N21 on chr=1; Num_of_Contigs=3; )
PPIC ENSSSCG00000008915 8:52131970-52140116   CU930023,CH242-296L22,8:52124161-52142921
(Clone quality: bE296L22 on chr=8; Num_of_Contigs=9; )
PPID   ENSSSCG00000008878 8:41236401-41250927   CU896689,CH242-1N13,8:41180262-41282411
(Clone quality: bE1N13 on chr=8; Num_of_Contigs=4; )
PPIE   ENSSSCG00000003664 6:65624698-65639794 CR956427,CH242-51O7,6:65474974-65651225
(No clone quality info on bE51O7) 		 
PPIF   ENSSSCG00000010330 14:85205810-85212642   CT827949,CH242-259N24,14:85046239-85223409
(Clone quality: bE259N24 on chr=14; Num_of_Contigs=1; )
PPIG ENSSSCG00000015934 15:71377171-71407147    
PPIH ENSSSCG00000003964 6:120933170-120951473   CU467721,CH242-292B22,6:120927206-120962427
(Clone quality: bE292B22 on chr=6; Num_of_Contigs=5; )
PPIL1   ENSSSCG00000001568 7:37156256-37177532 CU326356,CH242-61G11,7:36975834-37183903
(Clone quality: bE61G11 on chr=7; Num_of_Contigs=4; ) 		 
PPIL2   ENSSSCG00000010083 14:51283055-51306558   CU633431,CH242-79C11,14:51180713-51414471
(Clone quality: bE79C11 on chr=14; Num_of_Contigs=4; )
PPIL3   ENSSSCG00000016096 15:98257521-98272029   CU468511,CH242-98M12,15:98176186-98278835
(Clone quality: bE98M12 on chr=15; Num_of_Contigs=5; )
PPIL4   ENSSSCG00000004107 1:17312194-17396895    
PPIL5   ENSSSCG00000005004 1:187878146-187889156    
PPIL6   ENSSSCG00000004413 1:80481661-80524575   CU075452,CH242-39D23,1:80450203-80633251
(Clone quality: bE39D23 on chr=1; Num_of_Contigs=2; )
PPM1A ENSSSCG00000005084 1:197977296-197988154   CU550674,CH242-316H7,1:197971229-197995013
(Clone quality: bE316H7 on chr=1; Num_of_Contigs=8; )
PPM1B   ENSSSCG00000008451 3:89624495-89653909    
PPM1D   ENSSSCG00000017677 12:35488384-35538446    
PPM1E   ENSSSCG00000017647 12:33272112-33295911    
PPM1F   ENSSSCG00000010079 14:51055422-51075048   CU468588,CH242-282B12,14:50969832-51085093
(Clone quality: bE282B12 on chr=14; Num_of_Contigs=2; )
PPM1J   ENSSSCG00000006774 4:112096410-112101502    
PPM1M   ENSSSCG00000011434 13:29020534-29023922   CU915558,CH242-407L22,13:29012423-29031095
(Clone quality: bE407L22 on chr=13; Num_of_Contigs=4; )
PPME1   ENSSSCG00000014836 9:8218150-8269089    
PPOX   ENSSSCG00000006361 4:92792961-92796731   CU606874,CH242-28G15,4:92745461-92814223
(Clone quality: bE28G15 on chr=4; Num_of_Contigs=6; )
PPP1CA   ENSSSCG00000012913 2:3501365-3504471   CU633429,CH242-6G2,2:3486771-3519792
(Clone quality: bE6G2 on chr=2; Num_of_Contigs=8; )
PPP1CB   ENSSSCG00000008540 3:103459106-103477888   CU915333,CH242-291B11,3:103448942-103483458
(Clone quality: bE291B11 on chr=3; Num_of_Contigs=4; )
PPP1CC ENSSSCG00000009828 14:32098179-32119140   CT827876,CH242-281I3,14:32088666-32208462
(Clone quality: bE281I3 on chr=14; Num_of_Contigs=4; )
PPP1R10 ENSSSCG00000001347 7:26703760-26719978 CU498826,CH242-119D24,7:26553813-26728014
(Clone quality: bE119D24 on chr=7; Num_of_Contigs=31; ) 		 
PPP1R10 ENSSSCG00000001369 7:27034482-27043760 CU326403,CH242-198M20,7:26882096-27123407
(Clone quality: bE198M20 on chr=7; Num_of_Contigs=9; ) 		 
PPP1R11 ENSSSCG00000001238 7:24722549-24835286    
PPP1R12A   ENSSSCG00000000946 5:96011473-96081050    
PPP1R12B   ENSSSCG00000010925 10:24518667-24686347    
PPP1R13B   ENSSSCG00000002544 7:132767188-132788195    
PPP1R14B   ENSSSCG00000013035 2:6249844-6252340   CU861533,CH242-1H13,2:6249822-6260732
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )
PPP1R14C   ENSSSCG00000004094 1:16670319-16911767    
PPP1R14D   ENSSSCG00000004760 1:136982273-137006480    
PPP1R15A ENSSSCG00000003155 6:37823517-37825139   FP102974,CH242-517N5,6:37823193-37829576
(Clone quality: bE517N5 on chr=6; Num_of_Contigs=15; )
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Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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