Database federations
We plan to build a federated databases/tools platform, to place complex routines
behind scene and provide turn-key solutions for end users. Several tools on the
list were published before (see below), and are under active further development
for data/function sharings.
 Find and download
Genome elements |
 Map feature alignments:
Genes, QTL, SNP, etc |
 Search for genes
information |
 Manage your
expression experiment |
 8,315 QTLs as of
Dec 27, 2012 |
 Iowa Porcine Assembly
TGI, UniGen, etc |
 Plot trait values
on the pig genome |
 Comparative maps:
human, rat, cattle, etc |
 Blast search against
build 10 chromosomes |
 Tools that support
community activities |
 Data Repository |
 Correlation DB |
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References
- Zhi-Liang Hu, Carissa A. Park, Xiao-Lin Wu and James M. Reecy (2012). Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic Acids Research, 41 (D1): D871-D879.
- Zhi-Liang Hu, Dinesh Kumar, and James Reecy (2012). CorrDB: A Livestock Animal Genetic/Phenotypic Trait Correlation Database. Plant & Animal Genomes XX Conference, January 12-16, 2013. Town & Country Convention Center, San Diego, CA.
- Zhi-Liang Hu, Oliver Couture, Eric Fritz, Carissa Park, Christopher K. Tuggle, and James Reecy (2012). Pig Genome Database: A Central Pig Genome Information Hub to Support the Community Activities. Plant & Animal Genomes XX Conference, January 14-19, 2012. Town & Country Convention Center, San Diego, CA.
- Zhi-Liang Hu, Carissa A. Park, Eric R. Fritz and James M. Reecy (2010). QTLdb: A Comprehensive Database Tool Building Bridges between Genotypes
and Phenotypes. Invited Lecture with full paper published electronically on The 9th World
Congress on Genetics Applied to Livestock Production. Leipzig, Germany August 1-6, 2010.
- Oliver Couture, Keith Callenberg, Neeraj Koul, Sushain Pandit, Remy Younes, Zhi-Liang Hu, Jac
k Dekkers, James Reecy, Vasant Honavar, Christopher Tuggle (2009). ANEXdb: an integrated animal ANnotation and microarray EXpression
database. Mamm Genome, DOI 10.1007/s00335-009-9234-1
- James E Koltes, Steven G Davis, Zhi-Liang Hu, Mary Shimoyama, Melinda Dwinell, Anne E Kwitek, James M Reecy (2011). VCmap: A Comparative Genomics Viewer and Database Designed to Facilitate Genomic Discovery. Plant & Animal Genomes XVIII Conference, January 14-19, 2011. Town & Country Convention Center, San Diego, CA.
- Zhi-Liang Hu, Rex Fernando, Dorian Garrick, James M. Reecy (2010). SNPlotz: a generic genome plot tool to aid the SNP association studies. BMC Bioinformatics 2010, 11(Suppl 4):P4.
- Zhi-Liang Hu, Svetlana Dracheva, Wonhee Jang, Donna Maglott, John Bastiaansen, Max F. Rothschild and James M. Reecy (2005). "A QTL Resource and Comparison Tool for Pigs: PigQTLDB". Mammalian Genome. (2005) Volume 16(10):792-800.
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